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A serum-stable RNA aptamer specific for SARS-CoV-2 neutralizes viral entry
PNAS 2021
Valero, J., Civit, L., Dupont, D. M., Selnihhin, D., Reinert, L. S., Idorn, M., Israels, B. A., Bednarz, A. M., Bus, C., Asbach, B., Peterhoff, D., Pedersen, F. S., Birkedal, V., Wagner, R., Paludan, S. R., & Kjems, J.
This study developed RBD-PB6, a serum-stable RNA aptamer that binds the receptor-binding domain (RBD) of the SARS-CoV-2 spike protein and neutralizes viral entry, and showed that multimerizing it into dimers and trimers strongly enhances binding avidity and neutralizing potency. Flow Induced Dispersion Analysis (FIDA), on a Fida 1 instrument, was used to characterize the aptamer–spike interaction under native conditions by monitoring the change in hydrodynamic radius of the fluorescently labeled aptamer as it binds RBD, fitting a 1:1 model and quantifying the multimers' avidity gain (apparent KD ~0.8 nM trimer, ~1.4 nM dimer). It is an example of using FIDA to measure aptamer–target binding affinity in solution.
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A serum-stable RNA aptamer specific for SARS-CoV-2 neutralizes viral entry
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