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Screening de. novo designed protein binders in unpurified lysate using flow induced dispersion analysis
Flow Induced Dispersion Analysis (FIDA) can screen de novo designed protein binders directly in unpurified bacterial lysate. The researchers used FIDA on a Fida 1 instrument to measure the hydrodynamic radius of fluorescently labeled targets — the ALFA-tag peptide and the PSD-95 GK domain — and detect the size increase that occurs when an RFdiffusion-designed binder binds. Using heat-treated lysates, successful, thermostable binders were identified in a single measurement, so primary hits could be found within one day of expression without purification. Follow-up titrations gave micromolar affinities for ALFA-tag binders and nanomolar affinities for GK-domain binders. Because FIDA needs no immobilization, uses minimal sample and tolerates complex biological samples, it offers a fast, cost-effective way to screen and characterize computationally generated protein binders.
